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The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment
Ning, Kang1,3; Nesvizhskii, Alexey I.1,2
2010-12-14
发表期刊BMC BIOINFORMATICS
卷号11期号:1页码:1
摘要

Background: Most mass spectrometry (MS) based proteomic studies depend on searching acquired tandem mass (MS/MS) spectra against databases of known protein sequences. In these experiments, however, a large number of high quality spectra remain unassigned. These spectra may correspond to novel peptides not present in the database, especially those corresponding to novel alternative splice (AS) forms. Recently, fast and comprehensive profiling of mammalian genomes using deep sequencing (i.e. RNA-Seq) has become possible. MS-based proteomics can potentially be used as an aid for protein-level validation of novel AS events observed in RNA-Seq data.

文章类型Article
WOS标题词Science & Technology ; Life Sciences & Biomedicine
DOI10.1186/1471-2105-11-S11-S14
关键词[WOS]PEPTIDE IDENTIFICATION ; TANDEM ; GENOME ; GENE ; PROTEINS ; SPECTRA ; EVENTS ; INDEX
收录类别SCI
语种英语
WOS研究方向Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Mathematical & Computational Biology
WOS类目Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Mathematical & Computational Biology
WOS记录号WOS:000290219200014
引用统计
文献类型期刊论文
条目标识符http://ir.qibebt.ac.cn/handle/337004/6534
专题单细胞中心组群
作者单位1.Univ Michigan, Dept Pathol, Ann Arbor, MI 48109 USA
2.Univ Michigan, Ctr Computat Biol & Med, Ann Arbor, MI 48109 USA
3.Chinese Acad Sci, BioEnergy Genome Ctr, Qingdao Inst BioEnergy & Bioproc Technol, Beijing 100864, Peoples R China
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Ning, Kang,Nesvizhskii, Alexey I.. The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment[J]. BMC BIOINFORMATICS,2010,11(1):1.
APA Ning, Kang,&Nesvizhskii, Alexey I..(2010).The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment.BMC BIOINFORMATICS,11(1),1.
MLA Ning, Kang,et al."The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment".BMC BIOINFORMATICS 11.1(2010):1.
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