Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)

doi:10.1111/zsc.12298

QIBEBT-IR

	Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)
	Cheng, Jiao 1,3,4; Chan, Tin-Yam 5,6; Zhang, Nan 1; Sun, Song 1,3,4; Sha, Zhong-li 1,2,3,4
	2018-09-01
发表期刊	ZOOLOGICA SCRIPTA
ISSN	0300-3256
卷号	47 期号:5 页码:582-594
摘要	The taxonomy and phylogeny of Penaeoidea have long been fraught with controversy. Here, we carried out the first mitochondrial phylogenomic analysis on all the penaeoid families and tribes, including nine newly sequenced and 14 published mitogenomes, towards elucidating the phylogeny and evolutionary history of Penaeoidea. All these nine mitogenomes exhibit the pancrustacean ground pattern, except that Benthonectes filipes contains two additional clusters of tRNA(Ala), tRNA(Arg) and tRNA(Asn) and an uncommon noncoding region. The resulted phylogenetic tree is generally well resolved with Benthesicymidae sister to Aristeidae, forming a clade with Solenoceridae. Contrary to traditional classification, this clade has a sister relationship with the tribe Penaeini of the family Penaeidae. The family Sicyoniidae is deeply nested within the penaeid tribe Trachypenaeini which forms a sister clade with the remaining penaeid tribe, Parapenaeini. As the family Penaeidae is recovered to be polyphyletic, the three tribes in Penaeidae are all elevated to familial status. On the other hand, the family Sicyoniidae is retained to accommodate Trachypenaeini because they are now synonyms and the former name is more senior. This work is the first molecular analysis concurring with the latest findings in fossil assessments showing that Parapeaneini is the most primitive in Penaeoidae. Our results also illustrate a shallow-water origin and an onshore-offshore evolutionary shift in penaeoid shrimps.
关键词	evolution mitochondrial genome Penaeoidea phylogeny taxonomy
DOI	10.1111/zsc.12298
关键词[WOS]	DNA-SEQUENCES ; PHYLOGENETIC ANALYSIS ; MOLECULAR PHYLOGENY ; FOSSIL RECORD ; SEA ; GENOME ; SHRIMP ; PATTERNS ; ZOOGEOGRAPHY ; DUPLICATION
语种	英语
资助项目	Chinese Academy of Sciences[QYZDBSSW-DQC036] ; Chinese Academy of Sciences[XDA11030201] ; Chinese Academy of Sciences[XDA1103040102] ; RV KEXUE[KEXUE2016G05] ; Ministry of Science and Technology in Taiwan ; Center of Excellence for the Oceans, National Taiwan Ocean University from The Featured Areas Research Center Program within the framework of the Higher Education Sprout Project by the Ministry of Education in Taiwan
WOS研究方向	Evolutionary Biology ; Zoology
项目资助者	Chinese Academy of Sciences ; RV KEXUE ; Ministry of Science and Technology in Taiwan ; Center of Excellence for the Oceans, National Taiwan Ocean University from The Featured Areas Research Center Program within the framework of the Higher Education Sprout Project by the Ministry of Education in Taiwan
WOS类目	Evolutionary Biology ; Zoology
WOS记录号	WOS:000441447400006
出版者	WILEY
引用统计
文献类型	期刊论文
条目标识符	http://ir.qibebt.ac.cn/handle/337004/12414
专题	中国科学院青岛生物能源与过程研究所
通讯作者	Sha, Zhong-li
作者单位	1.Chinese Acad Sci, Inst Oceanol, Qingdao, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China 3.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China 4.Univ Chinese Acad Sci, Beijing, Peoples R China 5.Natl Taiwan Ocean Univ, Inst Marine Biol, Keelung, Taiwan 6.Natl Taiwan Ocean Univ, Ctr Excellence Oceans, Keelung, Taiwan
推荐引用方式 GB/T 7714	Cheng, Jiao,Chan, Tin-Yam,Zhang, Nan,et al. Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)[J]. ZOOLOGICA SCRIPTA,2018,47(5):582-594.
APA	Cheng, Jiao,Chan, Tin-Yam,Zhang, Nan,Sun, Song,&Sha, Zhong-li.(2018).Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda).ZOOLOGICA SCRIPTA,47(5),582-594.
MLA	Cheng, Jiao,et al."Mitochondrial phylogenomics reveals insights into taxonomy and evolution of Penaeoidea (Crustacea: Decapoda)".ZOOLOGICA SCRIPTA 47.5(2018):582-594.