Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data

doi:10.1093/bioinformatics/bts470

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	Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data
	Su, Xiaoquan ; Xu, Jian; Ning, Kang 1
	2012-10-01
发表期刊	BIOINFORMATICS
卷号	28 期号:19 页码:2493-2501
摘要	Background: It has long been intriguing scientists to effectively compare different microbial communities (also referred as 'metagenomic samples' here) in a large scale: given a set of unknown samples, find similar metagenomic samples from a large repository and examine how similar these samples are. With the current metagenomic samples accumulated, it is possible to build a database of metagenomic samples of interests. Any metagenomic samples could then be searched against this database to find the most similar metagenomic sample(s). However, on one hand, current databases with a large number of metagenomic samples mostly serve as data repositories that offer few functionalities for analysis; and on the other hand, methods to measure the similarity of metagenomic data work well only for small set of samples by pairwise comparison. It is not yet clear, how to efficiently search for metagenomic samples against a large metagenomic database.
文章类型	Article
WOS标题词	Science & Technology ; Life Sciences & Biomedicine ; Technology ; Physical Sciences
DOI	10.1093/bioinformatics/bts470
关键词[WOS]	GUT MICROBIOME ; DIVERSITY ; CONVERGENCE ; BIOSPHERE ; RELEVANT ; CARIES ; DIET
收录类别	SCI
语种	英语
WOS研究方向	Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Computer Science ; Mathematical & Computational Biology ; Mathematics
WOS类目	Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Computer Science, Interdisciplinary Applications ; Mathematical & Computational Biology ; Statistics & Probability
WOS记录号	WOS:000309687500012
引用统计
文献类型	期刊论文
条目标识符	http://ir.qibebt.ac.cn/handle/337004/6340
专题	单细胞中心组群
作者单位	1.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Shandong Key Lab Energy Genet, CAS Key Lab Biofuels, Qingdao 266101, Shandong, Peoples R China 2.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, BioEnergy Genome Ctr, Qingdao 266101, Shandong, Peoples R China
推荐引用方式 GB/T 7714	Su, Xiaoquan,Xu, Jian,Ning, Kang. Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data[J]. BIOINFORMATICS,2012,28(19):2493-2501.
APA	Su, Xiaoquan,Xu, Jian,&Ning, Kang.(2012).Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.BIOINFORMATICS,28(19),2493-2501.
MLA	Su, Xiaoquan,et al."Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data".BIOINFORMATICS 28.19(2012):2493-2501.