中国科学院青岛生物能源与过程研究所机构知识库
Advanced  
QIBEBT-IR  > 单细胞中心  > 期刊论文
Title:
GPU-Meta-Storms: Computing the similarities among massive microbial communities using GPU
Author: Su, X. ; Wang, X. ; Xu Jian(徐健) ; Ning, K
Source: Paper presented at the Systems Biology
Issued Date: 2013
Issue: 2013.07.19
Subject: 生物资源::功能基因组
Abstract:  Motivation: The number of microbial community samples is increasing with exponential speed. Data-mining among microbial community samples could facilitate the discovery of valuable biological information yet hidden in the massive data. However, current methods for the comparison among microbial communities are limited by their ability to process very large amount of samples each with complex community structure.
Summary: We have developed an optimized GPU-based software, GPU-Meta-Storms, to efficiently measure the quantitative phylogenetic similarity among massive amount of microbial community samples. Our results have shown that GPU-Meta-Storms would be able to compute the pair-wise similarity scores for 10,240 samples within 20 minutes, which gained a speed-up of more than 17,000 times compared to single-core CPU, and more than 2,600 times compared to 16-core CPU. Therefore, the high-performance of GPU-Meta-Storms could facilitate in-depth data mining among massive microbial community samples, and make the real-time analysis and monitoring of temporal or conditional changes for microbial communities possible.
Availability: GPU-Meta-Storms is implemented by CUDA (Compute Unified Device Architecture) and C++. Source code is available at http://www.computationalbioenergy.org/meta-storms.html.
 
Indexed Type: EI
Language: 英语
Content Type: 期刊论文
URI: http://ir.qibebt.ac.cn/handle/337004/1611
Appears in Collections:单细胞中心_期刊论文

Files in This Item: Download All
File Name/ File Size Content Type Version Access License
GPU-Meta-Storms Computing the structure similarities among massive amount of microbial community samples using GPU.pdf(208KB)----开放获取View Download

Recommended Citation:
Su, X.,Wang, X.,Xu, J.,et al. GPU-Meta-Storms: Computing the similarities among massive microbial communities using GPU[J]. Paper presented at the Systems Biology,2013(2013.07.19).
Service
Recommend this item
Sava as my favorate item
Show this item's statistics
Export Endnote File
Google Scholar
Similar articles in Google Scholar
[Su, X.]'s Articles
[Wang, X.]'s Articles
[Xu, J.]'s Articles
CSDL cross search
Similar articles in CSDL Cross Search
[Su, X.]‘s Articles
[Wang, X.]‘s Articles
[Xu, J.]‘s Articles
Related Copyright Policies
Null
Social Bookmarking
Add to CiteULike Add to Connotea Add to Del.icio.us Add to Digg Add to Reddit
文件名: GPU-Meta-Storms Computing the structure similarities among massive amount of microbial community samples using GPU.pdf
格式: Adobe PDF
所有评论 (0)
暂无评论
 
评注功能仅针对注册用户开放,请您登录
您对该条目有什么异议,请填写以下表单,管理员会尽快联系您。
内 容:
Email:  *
单位:
验证码:   刷新
您在IR的使用过程中有什么好的想法或者建议可以反馈给我们。
标 题:
 *
内 容:
Email:  *
验证码:   刷新

Items in IR are protected by copyright, with all rights reserved, unless otherwise indicated.

 

 

Valid XHTML 1.0!
Powered by CSpace