Complete genome of Cobetia marina JCM 21022(T) and phylogenomic analysis of the family Halomonadaceae

doi:10.1007/s00343-017-6239-6

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	Complete genome of Cobetia marina JCM 21022(T) and phylogenomic analysis of the family Halomonadaceae
	Tang Xianghai 1; Xu Kuipeng 1; Han Xiaojuan1,3 ; Mo Zhaolan 2; Mao Yunxiang 1
	2018-03-01
发表期刊	JOURNAL OF OCEANOLOGY AND LIMNOLOGY
ISSN	2096-5508
卷号	36 期号:2 页码:528-536
摘要	Cobetia marina is a model proteobacteria in researches on marine biofouling. Its taxonomic nomenclature has been revised many times over the past few decades. To better understand the role of the surface-associated lifestyle of C. marina and the phylogeny of the family Halomonadaceae, we sequenced the entire genome of C. marina JCM 21022(T) using single molecule real-time sequencing technology (SMRT) and performed comparative genomics and phylogenomics analyses. The circular chromosome was 4 176 300 bp with an average GC content of 62.44% and contained 3 611 predicted coding sequences, 72 tRNA genes, and 21 rRNA genes. The C. marina JCM 21022(T) genome contained a set of crucial genes involved in surface colonization processes. The comparative genome analysis indicated the significant differences between C. marina JCM 21022(T) and Cobetia amphilecti KMM 296 (formerly named C. marina KMM 296) resulted from sequence insertions or deletions and chromosomal recombination. Despite these differences, pan and core genome analysis showed similar gene functions between the two strains. The phylogenomic study of the family Halomonadaceae is reported here for the first time. We found that the relationships were well resolved among every genera tested, including Chromohalobacter, Halomonas, Cobetia, Kushneria, Zymobacter, and Halotalea.
文章类型	Article
关键词	Cobetia Marina Jcm 21022(t) Halomonadaceae Complete Genome Sequence Comparative Genomics Phylogenomics Surface Colonization Single Molecule Real-time Sequencing Technology (Smrt)
WOS标题词	Science & Technology ; Life Sciences & Biomedicine ; Physical Sciences
DOI	10.1007/s00343-017-6239-6
关键词[WOS]	SP-NOV ; BACTERIAL ATTACHMENT ; EMENDED DESCRIPTION ; GEN.-NOV. ; RNA GENES ; SEQUENCE ; OSMOTOLERANT ; ZYMOBACTER ; HALOTALEA ; SURFACES
收录类别	SCI
语种	英语
WOS研究方向	Marine & Freshwater Biology ; Oceanography
项目资助者	National Natural Science Foundation of China(41006082 ; 31372517)
WOS类目	Limnology ; Oceanography
WOS记录号	WOS:000431662200032
出版者	SCIENCE PRESS
引用统计	被引频次：5[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qibebt.ac.cn/handle/337004/11486
专题	中国科学院青岛生物能源与过程研究所
通讯作者	Mao Yunxiang
作者单位	1.Ocean Univ China, Coll Marine Life Sci, Key Lab Marine Genet & Breeding, Minist Educ, Qingdao 266003, Peoples R China 2.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Key Lab Sustainable Dev Marine Fisheries, Minist Agr, Qingdao 266071, Peoples R China 3.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, CAS Key Lab Biobased Mat, Qingdao 266101, Peoples R China
推荐引用方式 GB/T 7714	Tang Xianghai,Xu Kuipeng,Han Xiaojuan,et al. Complete genome of Cobetia marina JCM 21022(T) and phylogenomic analysis of the family Halomonadaceae[J]. JOURNAL OF OCEANOLOGY AND LIMNOLOGY,2018,36(2):528-536.
APA	Tang Xianghai,Xu Kuipeng,Han Xiaojuan,Mo Zhaolan,&Mao Yunxiang.(2018).Complete genome of Cobetia marina JCM 21022(T) and phylogenomic analysis of the family Halomonadaceae.JOURNAL OF OCEANOLOGY AND LIMNOLOGY,36(2),528-536.
MLA	Tang Xianghai,et al."Complete genome of Cobetia marina JCM 21022(T) and phylogenomic analysis of the family Halomonadaceae".JOURNAL OF OCEANOLOGY AND LIMNOLOGY 36.2(2018):528-536.