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Complete genome of Cobetia marina JCM 21022(T) and phylogenomic analysis of the family Halomonadaceae
Tang Xianghai1; Xu Kuipeng1; Han Xiaojuan1,3; Mo Zhaolan2; Mao Yunxiang1
2018-03-01
发表期刊JOURNAL OF OCEANOLOGY AND LIMNOLOGY
ISSN2096-5508
卷号36期号:2页码:528-536
摘要Cobetia marina is a model proteobacteria in researches on marine biofouling. Its taxonomic nomenclature has been revised many times over the past few decades. To better understand the role of the surface-associated lifestyle of C. marina and the phylogeny of the family Halomonadaceae, we sequenced the entire genome of C. marina JCM 21022(T) using single molecule real-time sequencing technology (SMRT) and performed comparative genomics and phylogenomics analyses. The circular chromosome was 4 176 300 bp with an average GC content of 62.44% and contained 3 611 predicted coding sequences, 72 tRNA genes, and 21 rRNA genes. The C. marina JCM 21022(T) genome contained a set of crucial genes involved in surface colonization processes. The comparative genome analysis indicated the significant differences between C. marina JCM 21022(T) and Cobetia amphilecti KMM 296 (formerly named C. marina KMM 296) resulted from sequence insertions or deletions and chromosomal recombination. Despite these differences, pan and core genome analysis showed similar gene functions between the two strains. The phylogenomic study of the family Halomonadaceae is reported here for the first time. We found that the relationships were well resolved among every genera tested, including Chromohalobacter, Halomonas, Cobetia, Kushneria, Zymobacter, and Halotalea.
文章类型Article
关键词Cobetia Marina Jcm 21022(t) Halomonadaceae Complete Genome Sequence Comparative Genomics Phylogenomics Surface Colonization Single Molecule Real-time Sequencing Technology (Smrt)
WOS标题词Science & Technology ; Life Sciences & Biomedicine ; Physical Sciences
DOI10.1007/s00343-017-6239-6
关键词[WOS]SP-NOV ; BACTERIAL ATTACHMENT ; EMENDED DESCRIPTION ; GEN.-NOV. ; RNA GENES ; SEQUENCE ; OSMOTOLERANT ; ZYMOBACTER ; HALOTALEA ; SURFACES
收录类别SCI
语种英语
WOS研究方向Marine & Freshwater Biology ; Oceanography
项目资助者National Natural Science Foundation of China(41006082 ; 31372517)
WOS类目Limnology ; Oceanography
WOS记录号WOS:000431662200032
出版者SCIENCE PRESS
引用统计
文献类型期刊论文
条目标识符http://ir.qibebt.ac.cn/handle/337004/11486
专题中国科学院青岛生物能源与过程研究所
通讯作者Mao Yunxiang
作者单位1.Ocean Univ China, Coll Marine Life Sci, Key Lab Marine Genet & Breeding, Minist Educ, Qingdao 266003, Peoples R China
2.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Key Lab Sustainable Dev Marine Fisheries, Minist Agr, Qingdao 266071, Peoples R China
3.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, CAS Key Lab Biobased Mat, Qingdao 266101, Peoples R China
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Tang Xianghai,Xu Kuipeng,Han Xiaojuan,et al. Complete genome of Cobetia marina JCM 21022(T) and phylogenomic analysis of the family Halomonadaceae[J]. JOURNAL OF OCEANOLOGY AND LIMNOLOGY,2018,36(2):528-536.
APA Tang Xianghai,Xu Kuipeng,Han Xiaojuan,Mo Zhaolan,&Mao Yunxiang.(2018).Complete genome of Cobetia marina JCM 21022(T) and phylogenomic analysis of the family Halomonadaceae.JOURNAL OF OCEANOLOGY AND LIMNOLOGY,36(2),528-536.
MLA Tang Xianghai,et al."Complete genome of Cobetia marina JCM 21022(T) and phylogenomic analysis of the family Halomonadaceae".JOURNAL OF OCEANOLOGY AND LIMNOLOGY 36.2(2018):528-536.
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